Transcript: ENSRNOT00000066932.6 Scn5a-202

Description

sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]

Gene Synonyms

Nav1.5, RATRSKM2X, RSKM2X, SCAL, Scn2x, rSkM2

Location

Primary_assembly 8: 128,098,613-128,196,470 reverse strand.

About this transcript

This transcript has 27 exons, is annotated with 120 domains and features, is associated with 551 variant alleles and maps to 346 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000015049.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000082892.3	Scn5a-203	8448	2020aa	ENSRNOP00000069875.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JWG8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000064555.5	Scn5a-201	8448	2020aa	ENSRNOP00000060180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPK3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000066932.6	Scn5a-202	8286	1966aa	ENSRNOP00000060586.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LNF5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 8,286 bps, Translation length: 1,966 residues

Version

ENSRNOT00000066932.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000066932.6 Scn5a-202

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Transcript: ENSRNOT00000066932.6 Scn5a-202

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