Transcript: ENSRNOT00000064178.4 Lig1-202

Description

DNA ligase 1 [Source:RGD Symbol;Acc:621424]

Gene Synonyms

LOC100911727, LOC360304, MGC105416

Location

Primary_assembly 1: 83,246,969-83,281,708 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 30 domains and features, is associated with 119 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000014193.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000019799.8	Lig1-201	3104	971aa	ENSRNOP00000019799.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8XFV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000109652.2	Lig1-203	3941	939aa	ENSRNOP00000089677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A998	-
ENSRNOT00000144210.1	Lig1-204	3299	928aa	ENSRNOP00000106715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KSM0	-
ENSRNOT00000064178.4	Lig1-202	2858	902aa	ENSRNOP00000061228.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M8E6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 2,858 bps, Translation length: 902 residues

Version

ENSRNOT00000064178.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000064178.4 Lig1-202

Summary

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Transcript: ENSRNOT00000064178.4 Lig1-202

Summary

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