Transcript: ENSRNOT00000060838.6 Col8a1-201

Description

collagen type VIII alpha 1 chain [Source:RGD Symbol;Acc:1309361]

Gene Synonyms

LOC304021

Location

About this transcript

This transcript has 3 exons, is annotated with 37 domains and features, is associated with 31 variant alleles and maps to 122 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000113782.2	Col8a1-202	2235	743aa	ENSRNOP00000089355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AA24 A6IQM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000060838.6	Col8a1-201	2946	705aa	ENSRNOP00000057564.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4AC70	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,946 bps, Translation length: 705 residues

Version

ENSRNOT00000060838.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.