Transcript: ENSRNOT00000059571.4 Npas2-201

Description

neuronal PAS domain protein 2 [Source:RGD Symbol;Acc:1309681]

Gene Synonyms

LOC316351

Location

Primary_assembly 9: 48,959,471-49,137,893 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 43 domains and features, is associated with 872 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000013408.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000156568.1	Npas2-203	4001	855aa	ENSRNOP00000104984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000059571.4	Npas2-201	4128	785aa	ENSRNOP00000056327.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MAG2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000163798.1	Npas2-204	3804	810aa	ENSRNOP00000108383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000156354.1	Npas2-202	3794	786aa	ENSRNOP00000099765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 4,128 bps, Translation length: 785 residues

Version

ENSRNOT00000059571.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000059571.4 Npas2-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSRNOT00000059571.4 Npas2-201

Summary

About Us

Get help

Our sister sites

Follow us