Transcript: ENSRNOT00000057378.5 Hdx-201

Description

highly divergent homeobox [Source:RGD Symbol;Acc:1563666]

Gene Synonyms

LOC317617, RGD1563666

Location

About this transcript

This transcript has 12 exons, is annotated with 11 domains and features, is associated with 425 variant alleles and maps to 65 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077587.2	Hdx-202	3794	647aa	ENSRNOP00000075430.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000057378.5	Hdx-201	4050	634aa	ENSRNOP00000054189.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A457	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 4,050 bps, Translation length: 634 residues

Version

ENSRNOT00000057378.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.