Transcript: ENSRNOT00000055829.5 Chd2-201

Description

chromodomain helicase DNA binding protein 2 [Source:RGD Symbol;Acc:1310056]

Gene Synonyms

LOC108349594, LOC308738

Location

Primary_assembly 1: 136,599,900-136,706,173 reverse strand.

About this transcript

This transcript has 37 exons, is annotated with 72 domains and features, is associated with 448 variant alleles and maps to 301 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000012716.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000090149.3	Chd2-203	6723	1840aa	ENSRNOP00000075309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KA92	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000076300.4	Chd2-202	7079	1834aa	ENSRNOP00000068303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MJY0 A6JBX9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000098073.2	Chd2-204	6950	1791aa	ENSRNOP00000085288.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GCU8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000131527.1	Chd2-205	6797	1740aa	ENSRNOP00000109795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000055829.5	Chd2-201	6705	1834aa	ENSRNOP00000052684.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4AD08	-
ENSRNOT00000157492.1	Chd2-206	5371	1699aa	ENSRNOP00000110047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 37, Coding exons: 37, Transcript length: 6,705 bps, Translation length: 1,834 residues

Version

ENSRNOT00000055829.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000055829.5 Chd2-201

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Transcript: ENSRNOT00000055829.5 Chd2-201

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