Transcript: ENSRNOT00000054931.4 Sectm1a-201

Description

secreted and transmembrane 1A [Source:RGD Symbol;Acc:1305973]

Gene Synonyms

LOC287885, Sectm1

Location

Primary_assembly 10: 106,835,949-106,846,934 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 160 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000036672.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106292.2	Sectm1a-203	1464	233aa	ENSRNOP00000090881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AEM6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000158674.1	Sectm1a-205	1778	215aa	ENSRNOP00000105201.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000054931.4	Sectm1a-201	1604	201aa	ENSRNOP00000051814.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AYS0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000115371.2	Sectm1a-204	1166	98aa	ENSRNOP00000092336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHD3	-
ENSRNOT00000101568.2	Sectm1a-202	654	175aa	ENSRNOP00000081653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTC8	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,604 bps, Translation length: 201 residues

Version

ENSRNOT00000054931.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000054931.4 Sectm1a-201

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Transcript: ENSRNOT00000054931.4 Sectm1a-201

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