Transcript: ENSRNOT00000051846.6 Cacna1c-202

Description

calcium voltage-gated channel subunit alpha1 C [Source:RGD Symbol;Acc:2245]

Gene Synonyms

RATIVS302, RBC

Location

Primary_assembly 4: 153,436,427-153,624,435 reverse strand.

About this transcript

This transcript has 45 exons, is annotated with 132 domains and features, is associated with 1124 variant alleles and maps to 442 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000007090.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114413.2	Cacna1c-206	6962	2223aa	ENSRNOP00000077418.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBT4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000121801.1	Cacna1c-207	8346	2195aa	ENSRNOP00000101938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000113714.2	Cacna1c-205	8271	2170aa	ENSRNOP00000094626.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKU9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000106776.2	Cacna1c-204	8271	2170aa	ENSRNOP00000094898.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ANR4 Q71QJ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000051846.6	Cacna1c-202	7652	2030aa	ENSRNOP00000048580.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MA84	-
ENSRNOT00000126089.1	Cacna1c-208	7392	2170aa	ENSRNOP00000108236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8VHT2	-
ENSRNOT00000041571.7	Cacna1c-201	7353	2157aa	ENSRNOP00000051397.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PT56	-
ENSRNOT00000170456.1	Cacna1c-209	6857	2188aa	ENSRNOP00000101159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000052017.8	Cacna1c-203	6755	2154aa	ENSRNOP00000048790.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2QC25	-

Summary

Statistics

Exons: 45, Coding exons: 45, Transcript length: 7,652 bps, Translation length: 2,030 residues

Version

ENSRNOT00000051846.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000051846.6 Cacna1c-202

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Transcript: ENSRNOT00000051846.6 Cacna1c-202

Summary

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