Transcript: ENSRNOT00000049832.7 Ptprj-201

Description

protein tyrosine phosphatase, receptor type, J [Source:RGD Symbol;Acc:3454]

Gene Synonyms

DEP-1

Location

About this transcript

This transcript has 22 exons, is annotated with 61 domains and features, is associated with 894 variant alleles and maps to 318 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077943.3	Ptprj-202	7659	1353aa	ENSRNOP00000070464.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000049832.7	Ptprj-201	7437	1285aa	ENSRNOP00000044688.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PTB7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 7,437 bps, Translation length: 1,285 residues

Version

ENSRNOT00000049832.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.