Transcript: ENSRNOT00000048300.5 Xirp2-201

Description

xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]

Gene Synonyms

Cmya3, LACS

Location

Primary_assembly 3: 72,534,186-72,621,056 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 92 domains and features, is associated with 636 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000034258.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000048300.5	Xirp2-201	12063	3302aa	ENSRNOP00000048045.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LMC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000117778.2	Xirp2-203	11965	3256aa	ENSRNOP00000079592.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZNK6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000101680.2	Xirp2-202	11782	3290aa	ENSRNOP00000090056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 12,063 bps, Translation length: 3,302 residues

Version

ENSRNOT00000048300.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000048300.5 Xirp2-201

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Transcript: ENSRNOT00000048300.5 Xirp2-201

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