Transcript: ENSRNOT00000048020.6 Sox6-201

Description

SRY-box transcription factor 6 [Source:RGD Symbol;Acc:1309000]

Gene Synonyms

LOC102549121

Location

Primary_assembly 1: 179,163,566-179,665,371 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 28 domains and features, is associated with 1724 variant alleles and maps to 192 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000020514.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000079072.3	Sox6-202	2965	855aa	ENSRNOP00000068898.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6R0V8A0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000127672.1	Sox6-204	2897	794aa	ENSRNOP00000110779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000048020.6	Sox6-201	2820	828aa	ENSRNOP00000044088.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8PLH1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000094350.2	Sox6-203	2746	842aa	ENSRNOP00000079879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZNG0	-
ENSRNOT00000157212.1	Sox6-205	2689	763aa	ENSRNOP00000107216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 2,820 bps, Translation length: 828 residues

Version

ENSRNOT00000048020.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000048020.6 Sox6-201

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Transcript: ENSRNOT00000048020.6 Sox6-201

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