Transcript: ENSRNOT00000045545.5 Irgm-201

Description

immunity-related GTPase M [Source:RGD Symbol;Acc:1305163]

Gene Synonyms

Ifggd3, Ifi1, LOC303090

Location

Primary_assembly 10: 33,734,641-33,742,578 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 88 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000031138.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045545.5	Irgm-201	2208	411aa	ENSRNOP00000047579.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HDU6 Q6AYC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000127882.1	Irgm-203	3805	395aa	ENSRNOP00000099006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AM97	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000106065.2	Irgm-202	1960	395aa	ENSRNOP00000094495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AM97 J7NUQ1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 2,208 bps, Translation length: 411 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6AYC2

Version

ENSRNOT00000045545.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000045545.5 Irgm-201

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Transcript: ENSRNOT00000045545.5 Irgm-201

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