Transcript: ENSRNOT00000044931.6 Lca5-201

Description

lebercilin LCA5 [Source:RGD Symbol;Acc:1308555]

Gene Synonyms

LOC300866, RGD1308555

Location

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 184 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000044931.6	Lca5-201	3127	727aa	ENSRNOP00000046841.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I1R3 Q5U2Y9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000086426.3	Lca5-202	2557	421aa	ENSRNOP00000074416.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K802 A6I1R1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 11, Coding exons: 7, Transcript length: 3,127 bps, Translation length: 727 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5U2Y9

Version

ENSRNOT00000044931.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.