Transcript: ENSRNOT00000039540.8 Ppfia4-201

Description

PTPRF interacting protein alpha 4 [Source:RGD Symbol;Acc:620055]

Gene Synonyms

LOC685423

Location

Primary_assembly 13: 48,305,848-48,354,279 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 39 domains and features, is associated with 155 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000003494.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115473.2	Ppfia4-204	3903	1188aa	ENSRNOP00000080414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQL8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000039540.8	Ppfia4-201	5852	1185aa	ENSRNOP00000033209.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6ICB3 F1M863	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000108350.2	Ppfia4-203	5825	1176aa	ENSRNOP00000081918.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUF7	-
ENSRNOT00000098935.2	Ppfia4-202	3683	1114aa	ENSRNOP00000094172.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AIZ8	-

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 5,852 bps, Translation length: 1,185 residues

Version

ENSRNOT00000039540.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000039540.8 Ppfia4-201

Summary

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Transcript: ENSRNOT00000039540.8 Ppfia4-201

Summary

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