Transcript: ENSRNOT00000034603.8 Sp140-201

Description

SP140 nuclear body protein [Source:RGD Symbol;Acc:1306355]

Gene Synonyms

LOC100911733, LOC316580

Location

Primary_assembly 9: 93,672,582-93,722,593 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 29 domains and features, is associated with 476 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000022800.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000034603.8	Sp140-201	2976	721aa	ENSRNOP00000031057.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q66H87	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000078987.3	Sp140-202	3069	693aa	ENSRNOP00000071192.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JZU7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119511.2	Sp140-204	2858	695aa	ENSRNOP00000080361.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZPF5	-
ENSRNOT00000110179.2	Sp140-203	2783	670aa	ENSRNOP00000096593.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6APK4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000165640.1	Sp140-205	1686	525aa	ENSRNOP00000110337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 2,976 bps, Translation length: 721 residues

Version

ENSRNOT00000034603.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000034603.8 Sp140-201

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Transcript: ENSRNOT00000034603.8 Sp140-201

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