Transcript: ENSRNOT00000033373.8 Pax5-201

Description

paired box 5 [Source:RGD Symbol;Acc:1565236]

Gene Synonyms

LOC500453, RGD1565236

Location

Primary_assembly 5: 63,561,723-63,739,987 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 1093 variant alleles and maps to 51 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000024729.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000144309.1	Pax5-208	1265	410aa	ENSRNOP00000108398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000134201.1	Pax5-207	2504	390aa	ENSRNOP00000107858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000117108.2	Pax5-206	2209	391aa	ENSRNOP00000078511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZL27 A6IJ74	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000103697.2	Pax5-203	2107	357aa	ENSRNOP00000091171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AB34	-
ENSRNOT00000112306.2	Pax5-205	2080	348aa	ENSRNOP00000087974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHR4	-
ENSRNOT00000101578.2	Pax5-202	1909	291aa	ENSRNOP00000085101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYI3	-
ENSRNOT00000033373.8	Pax5-201	1121	362aa	ENSRNOP00000030607.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M4W2	-
ENSRNOT00000110928.2	Pax5-204	1019	328aa	ENSRNOP00000090539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ACQ3	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,121 bps, Translation length: 362 residues

Version

ENSRNOT00000033373.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000033373.8 Pax5-201

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Transcript: ENSRNOT00000033373.8 Pax5-201

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