Transcript: ENSRNOT00000027407.6 Ctsd-201

Description

cathepsin D [Source:RGD Symbol;Acc:621511]

Location

Primary_assembly 1: 206,956,944-206,967,107 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features, is associated with 54 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000020206.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107378.2	Ctsd-202	1989	407aa	ENSRNOP00000093455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AIK0 A0A8I6AKF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000027407.6	Ctsd-201	1876	406aa	ENSRNOP00000027407.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7F3R8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000117470.2	Ctsd-203	1236	374aa	ENSRNOP00000092879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HY44	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,876 bps, Translation length: 406 residues

Version

ENSRNOT00000027407.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000027407.6 Ctsd-201

Summary

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Transcript: ENSRNOT00000027407.6 Ctsd-201

Summary

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