Transcript: ENSRNOT00000027393.7 Pcdha3-204

Description

protocadherin alpha 3 [Source:RGD Symbol;Acc:620336]

Location

Primary_assembly 18: 28,915,080-29,120,227 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 60 domains and features, is associated with 527 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000020119.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000074028.3	Pcdha3-207	5515	1031aa	ENSRNOP00000066853.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000027340.7	Pcdha3-201	5848	1006aa	ENSRNOP00000027340.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767H7	-
ENSRNOT00000027383.8	Pcdha3-203	5708	963aa	ENSRNOP00000027383.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I6	-
ENSRNOT00000027393.7	Pcdha3-204	5543	980aa	ENSRNOP00000027393.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I7	-
ENSRNOT00000079794.3	Pcdha3-210	5489	963aa	ENSRNOP00000075260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I8-1	-
ENSRNOT00000077824.3	Pcdha3-209	5462	980aa	ENSRNOP00000074100.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I6LBW4	-
ENSRNOT00000071366.3	Pcdha3-206	5453	950aa	ENSRNOP00000065957.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767J0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000027402.5	Pcdha3-205	5447	948aa	ENSRNOP00000027402.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767J1	-
ENSRNOT00000075810.4	Pcdha3-208	5447	949aa	ENSRNOP00000066774.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8XGC7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000027372.8	Pcdha3-202	5447	949aa	ENSRNOP00000027372.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I4	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,543 bps, Translation length: 980 residues

Version

ENSRNOT00000027393.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000027393.7 Pcdha3-204

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Transcript: ENSRNOT00000027393.7 Pcdha3-204

Summary

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