Transcript: ENSRNOT00000027271.8 Ptprf-201

Description

protein tyrosine phosphatase, receptor type, F [Source:RGD Symbol;Acc:3453]

Gene Synonyms

LAR, LARFN5C

Location

Primary_assembly 5: 137,028,164-137,095,426 reverse strand.

About this transcript

This transcript has 33 exons, is annotated with 106 domains and features, is associated with 364 variant alleles and maps to 308 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000019977.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000132695.1	Ptprf-205	6892	1961aa	ENSRNOP00000108464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000078302.3	Ptprf-202	6584	1918aa	ENSRNOP00000068583.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JT62	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000027271.8	Ptprf-201	6575	1915aa	ENSRNOP00000027271.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V8P4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000108252.2	Ptprf-204	6506	1892aa	ENSRNOP00000083289.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVM7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000164591.1	Ptprf-206	6296	1822aa	ENSRNOP00000105545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000102268.2	Ptprf-203	5699	1623aa	ENSRNOP00000082730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G9U8	-

Summary

Statistics

Exons: 33, Coding exons: 33, Transcript length: 6,575 bps, Translation length: 1,915 residues

Version

ENSRNOT00000027271.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000027271.8 Ptprf-201

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Transcript: ENSRNOT00000027271.8 Ptprf-201

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