Transcript: ENSRNOT00000025119.7 Sncaip-201

Description

synuclein, alpha interacting protein [Source:RGD Symbol;Acc:1309283]

Gene Synonyms

LOC307309, Syph1

Location

Primary_assembly 18: 48,405,473-48,542,243 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 35 domains and features, is associated with 685 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000018254.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000025119.7	Sncaip-201	3803	963aa	ENSRNOP00000025119.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IX21 D3ZWQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000082760.3	Sncaip-202	3682	902aa	ENSRNOP00000068903.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTZ6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000140498.1	Sncaip-206	3545	913aa	ENSRNOP00000101363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IX22	-
ENSRNOT00000101404.2	Sncaip-204	3365	853aa	ENSRNOP00000082386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUU7	-
ENSRNOT00000122351.1	Sncaip-205	3197	941aa	ENSRNOP00000110713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000098987.2	Sncaip-203	2123	501aa	ENSRNOP00000076896.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZJB5	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,803 bps, Translation length: 963 residues

Version

ENSRNOT00000025119.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000025119.7 Sncaip-201

Summary

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Transcript: ENSRNOT00000025119.7 Sncaip-201

Summary

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