Transcript: ENSRNOT00000025047.6 Lhx3-201

Description

LIM homeobox 3 [Source:RGD Symbol;Acc:71078]

Location

About this transcript

This transcript has 6 exons, is annotated with 32 domains and features, is associated with 76 variant alleles and maps to 108 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045587.3	Lhx3-202	2317	402aa	ENSRNOP00000044069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JTC6 G3V9E7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000025047.6	Lhx3-201	2165	400aa	ENSRNOP00000025047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JTC5 G3V8E3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,165 bps, Translation length: 400 residues

Version

ENSRNOT00000025047.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.