Transcript: ENSRNOT00000024493.8 Tpm1-201

Description

tropomyosin 1 [Source:RGD Symbol;Acc:3898]

Gene Synonyms

Alpha-tm, Tma2, Tmsa, tropomyosin 3, tropomyosin 3, alpha

Location

Primary_assembly 8: 67,641,021-67,662,244 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 37 variant alleles and maps to 190 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000018184.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000057641.6	Tpm1-206	1829	326aa	ENSRNOP00000054446.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7FIS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000040808.7	Tpm1-204	2825	281aa	ENSRNOP00000047134.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8YA57	-
ENSRNOT00000085894.2	Tpm1-207	1785	294aa	ENSRNOP00000070151.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JX64	-
ENSRNOT00000024617.8	Tpm1-203	1665	248aa	ENSRNOP00000024617.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AZ25	-
ENSRNOT00000024575.9	Tpm1-202	1633	284aa	ENSRNOP00000024575.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P04692-3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000112475.1	Tpm1-210	1568	257aa	ENSRNOP00000084613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GC15	-
ENSRNOT00000099012.1	Tpm1-209	1565	267aa	ENSRNOP00000085868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A156	-
ENSRNOT00000048044.6	Tpm1-205	1297	284aa	ENSRNOP00000048499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P04692-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000024493.8	Tpm1-201	1155	287aa	ENSRNOP00000024493.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q91XN6	-
ENSRNOT00000090288.2	Tpm1-208	903	300aa	ENSRNOP00000074187.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7F7	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,155 bps, Translation length: 287 residues

Version

ENSRNOT00000024493.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000024493.8 Tpm1-201

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Transcript: ENSRNOT00000024493.8 Tpm1-201

Summary

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