Transcript: ENSRNOT00000024445.5 Atg16l1-201

Description

autophagy related 16-like 1 [Source:RGD Symbol;Acc:1310631]

Gene Synonyms

Apg16l, LOC363278, Wdr30

Location

Primary_assembly 9: 95,869,865-95,905,357 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 40 domains and features, is associated with 150 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000017913.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080482.3	Atg16l1-202	3142	623aa	ENSRNOP00000075135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K9U6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000024445.5	Atg16l1-201	3100	607aa	ENSRNOP00000024445.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZFK6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000114063.2	Atg16l1-203	3037	588aa	ENSRNOP00000097226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GLZ1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,100 bps, Translation length: 607 residues

Version

ENSRNOT00000024445.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000024445.5 Atg16l1-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSRNOT00000024445.5 Atg16l1-201

Summary

About Us

Get help

Our sister sites

Follow us