Transcript: ENSRNOT00000023475.4 Chrna2-201

Description

cholinergic receptor nicotinic alpha 2 subunit [Source:RGD Symbol;Acc:621533]

Gene Synonyms

ACHR

Location

Primary_assembly 15: 44,517,862-44,534,144 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 39 domains and features, is associated with 186 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000017424.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000023475.4	Chrna2-201	1949	517aa	ENSRNOP00000023475.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P12389	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000139751.1	Chrna2-204	2745	479aa	ENSRNOP00000105569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000127420.1	Chrna2-203	1886	496aa	ENSRNOP00000100895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000124226.1	Chrna2-202	1781	496aa	ENSRNOP00000109692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,949 bps, Translation length: 517 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12389

Version

ENSRNOT00000023475.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000023475.4 Chrna2-201

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Transcript: ENSRNOT00000023475.4 Chrna2-201

Summary

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