Transcript: ENSRNOT00000022478.6 Tnfrsf1b-201

Description

TNF receptor superfamily member 1B [Source:RGD Symbol;Acc:621238]

Gene Synonyms

TNF-R2, TNF-RII, TNFR-II, Tnfr2, p75

Location

Primary_assembly 5: 162,353,848-162,387,411 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 45 domains and features, is associated with 376 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000016575.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000124636.1	Tnfrsf1b-204	1885	496aa	ENSRNOP00000102273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000022478.6	Tnfrsf1b-201	5296	474aa	ENSRNOP00000022478.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IU15 Q80WY6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119924.2	Tnfrsf1b-203	5284	470aa	ENSRNOP00000078858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLM8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000103500.2	Tnfrsf1b-202	5167	431aa	ENSRNOP00000094197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJ16	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 5,296 bps, Translation length: 474 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80WY6

Version

ENSRNOT00000022478.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000022478.6 Tnfrsf1b-201

Summary

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Transcript: ENSRNOT00000022478.6 Tnfrsf1b-201

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