Transcript: ENSRNOT00000020155.5 Pdcd4-201

Description

programmed cell death 4 [Source:RGD Symbol;Acc:620816]

Gene Synonyms

Dug

Location

Primary_assembly 1: 262,926,656-262,949,580 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 18 domains and features, is associated with 74 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000014779.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000020155.5	Pdcd4-201	2460	487aa	ENSRNOP00000020155.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QAG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000104317.2	Pdcd4-203	2891	464aa	ENSRNOP00000076788.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y727	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119971.2	Pdcd4-204	2390	450aa	ENSRNOP00000076366.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1-1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000097657.2	Pdcd4-202	2273	432aa	ENSRNOP00000091790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1-2	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,460 bps, Translation length: 487 residues

Version

ENSRNOT00000020155.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000020155.5 Pdcd4-201

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Transcript: ENSRNOT00000020155.5 Pdcd4-201

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