Transcript: ENSRNOT00000015044.8 Hmgb3l1-201

Description

high mobility group box 3 like 1 [Source:RGD Symbol;Acc:11443889]

Gene Synonyms

LOC108348204

Location

About this transcript

This transcript has 5 exons, is annotated with 26 domains and features and maps to 138 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000082140.3	Hmgb3l1-202	2123	384aa	ENSRNOP00000069465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000015044.8	Hmgb3l1-201	1709	216aa	ENSRNOP00000015044.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7EWK1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,709 bps, Translation length: 216 residues

Version

ENSRNOT00000015044.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.