Transcript: ENSRNOT00000013816.5 Sh3rf1-201

Description

SH3 domain containing ring finger 1 [Source:RGD Symbol;Acc:735154]

Gene Synonyms

LOC306417, Posh, Sh3md2

Location

About this transcript

This transcript has 12 exons, is annotated with 53 domains and features, is associated with 805 variant alleles and maps to 239 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000013816.5	Sh3rf1-201	5073	890aa	ENSRNOP00000013815.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q71F54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000158852.1	Sh3rf1-202	4948	857aa	ENSRNOP00000110766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 5,073 bps, Translation length: 890 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q71F54

Version

ENSRNOT00000013816.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.