Transcript: ENSRNOT00000012397.6 Erc1-201

Description

ELKS/RAB6-interacting/CAST family member 1 [Source:RGD Symbol;Acc:628733]

Gene Synonyms

CAST, Cast2, ERC, ERC-1, ERC1b, Elks, Rab6ip2

Location

Primary_assembly 4: 154,440,723-154,727,796 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 34 domains and features, is associated with 974 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000009264.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109038.2	Erc1-204	8540	1120aa	ENSRNOP00000094050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000091473.3	Erc1-202	8537	1119aa	ENSRNOP00000070778.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JYT1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000115061.2	Erc1-205	8456	1092aa	ENSRNOP00000084657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A0L5	-
ENSRNOT00000102886.2	Erc1-203	8396	1072aa	ENSRNOP00000092904.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AIL7	-
ENSRNOT00000135155.1	Erc1-206	8288	1036aa	ENSRNOP00000100714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000012397.6	Erc1-201	3625	1016aa	ENSRNOP00000012397.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPE9	-

Summary

Statistics

Exons: 20, Coding exons: 17, Transcript length: 3,625 bps, Translation length: 1,016 residues

Version

ENSRNOT00000012397.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000012397.6 Erc1-201

Summary

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Transcript: ENSRNOT00000012397.6 Erc1-201

Summary

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