Transcript: ENSRNOT00000010784.7 Sh3tc1-201

Description

SH3 domain and tetratricopeptide repeats 1 [Source:RGD Symbol;Acc:1305610]

Gene Synonyms

LOC305441

Location

About this transcript

This transcript has 18 exons, is annotated with 32 domains and features, is associated with 85 variant alleles and maps to 201 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000010784.7	Sh3tc1-201	4226	1347aa	ENSRNOP00000010784.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZLQ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000117836.1	Sh3tc1-202	4328	1320aa	ENSRNOP00000078567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZL28	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,226 bps, Translation length: 1,347 residues

Version

ENSRNOT00000010784.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.