Transcript: ENSRNOT00000009940.8 Foxa1-201

Description

forkhead box A1 [Source:RGD Symbol;Acc:2807]

Gene Synonyms

HNF-3-alpha, HNF-3A, Hnf3a

Location

About this transcript

This transcript has 3 exons, is annotated with 24 domains and features, is associated with 119 variant alleles and maps to 126 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009940.8	Foxa1-201	2116	475aa	ENSRNOP00000009940.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LR25	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000119772.2	Foxa1-202	2881	468aa	ENSRNOP00000090884.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AF62 A6HBP6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000124996.1	Foxa1-203	1530	452aa	ENSRNOP00000108474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000164561.1	Foxa1-205	1420	432aa	ENSRNOP00000111890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000148123.1	Foxa1-204	1390	454aa	ENSRNOP00000107871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,116 bps, Translation length: 475 residues

Version

ENSRNOT00000009940.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.