Transcript: ENSRNOT00000009573.8 Havcr1-201

Description

hepatitis A virus cellular receptor 1 [Source:RGD Symbol;Acc:708425]

Gene Synonyms

HAVcr-1, KIM-1, Kim1, TIMD-1

Location

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 363 variant alleles and maps to 149 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009573.8	Havcr1-201	2718	307aa	ENSRNOP00000009573.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HDS9 G3V6W3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000104970.2	Havcr1-202	2649	284aa	ENSRNOP00000076717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y0B2 A6HDT0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,718 bps, Translation length: 307 residues

Version

ENSRNOT00000009573.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.