Transcript: ENSRNOT00000007088.8 Sycp3-201

Description

synaptonemal complex protein 3 [Source:RGD Symbol;Acc:3795]

Gene Synonyms

LOC100362033, RNASCP3, SCP-3

Location

Primary_assembly 7: 24,761,552-24,775,932 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 81 variant alleles and maps to 161 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000005270.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000007088.8	Sycp3-201	1183	267aa	ENSRNOP00000007088.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q63520	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000110230.2	Sycp3-202	1827	251aa	ENSRNOP00000097669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AVA6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119996.2	Sycp3-203	1071	259aa	ENSRNOP00000087777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GGD2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,183 bps, Translation length: 267 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q63520

Version

ENSRNOT00000007088.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000007088.8 Sycp3-201

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Transcript: ENSRNOT00000007088.8 Sycp3-201

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