Transcript: ENSRNOT00000000824.5 Hps4-201

Description

HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 [Source:RGD Symbol;Acc:1308070]

Gene Synonyms

LOC304555

Location

About this transcript

This transcript has 12 exons, is annotated with 5 domains and features, is associated with 79 variant alleles and maps to 179 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000000824.5	Hps4-201	2462	680aa	ENSRNOP00000000824.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8YPH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000079256.2	Hps4-202	3352	645aa	ENSRNOP00000071892.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K1L6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,462 bps, Translation length: 680 residues

Version

ENSRNOT00000000824.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.