Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSRNOT00000015044.8 Hmgb3l1-201

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Description

high mobility group box 3 like 1 [Source:RGD Symbol;Acc:11443889]

Gene Synonyms

LOC108348204

Location

Primary_assembly X: 154,341,246-154,346,097 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 26 domains and features and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000011096.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000082140.3	Hmgb3l1-202	2123	384aa	ENSRNOP00000069465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000015044.8	Hmgb3l1-201	1709	216aa	ENSRNOP00000015044.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7EWK1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Protein summary

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Protein domains for ENSRNOP00000015044.7

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