Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Foxj3 ENSRNOG00000061851

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Description

forkhead box J3 [Source:RGD Symbol;Acc:1311770]

Gene Synonyms

LOC313554

Location

Primary_assembly 5: 133,140,884-133,228,489 forward strand.

mRatBN7.2:CM026978.1

About this gene

This gene has 3 transcripts (splice variants), 161 orthologues, 36 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000083754.2	Foxj3-201	4874	622aa	ENSRNOP00000069938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JWM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000103629.1	Foxj3-202	4772	588aa	ENSRNOP00000096130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQ64	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000105044.1	Foxj3-203	1484	157aa	ENSRNOP00000081502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZT28	-

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Summary

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