Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Foxj3 ENSRNOG00000061851

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Description

forkhead box J3 [Source:RGD Symbol;Acc:1311770]

Gene Synonyms

LOC313554

Location

Primary_assembly 5: 138,424,923-138,513,760 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants), 158 orthologues, 34 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000127482.1	Foxj3-205	5003	699aa	ENSRNOP00000106702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000103629.2	Foxj3-202	4831	622aa	ENSRNOP00000096130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQ64 A6JZP5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000083754.3	Foxj3-201	4811	695aa	ENSRNOP00000069938.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JWM4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000123874.1	Foxj3-204	4747	594aa	ENSRNOP00000108127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000105044.2	Foxj3-203	971	157aa	ENSRNOP00000081502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZT28	-

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Summary

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