Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Pcdh1 ENSRNOG00000060410

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Description

protocadherin 1 [Source:RGD Symbol;Acc:1308490]

Gene Synonyms

LOC307481

Location

Primary_assembly 18: 30,258,154-30,290,436 reverse strand.

GRCr8:CM070408.1

About this gene

This gene has 4 transcripts (splice variants), 268 orthologues, 33 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101935.2	Pcdh1-202	13740	1231aa	ENSRNOP00000077172.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XVV3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000113171.2	Pcdh1-203	13665	1216aa	ENSRNOP00000086663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAW9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000081850.3	Pcdh1-201	3500	1092aa	ENSRNOP00000073940.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K6T9	-
ENSRNOT00000121742.1	Pcdh1-204	1096	360aa	ENSRNOP00000109324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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