Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Pcdh1 ENSRNOG00000060410

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Description

protocadherin 1 [Source:RGD Symbol;Acc:1308490]

Gene Synonyms

LOC307481

Location

Primary_assembly 18: 30,013,185-30,039,318 reverse strand.

mRatBN7.2:CM026991.1

About this gene

This gene has 3 transcripts (splice variants), 271 orthologues, 33 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000081850.2	Pcdh1-201	5134	1231aa	ENSRNOP00000073940.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K6T9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000113171.1	Pcdh1-203	7516	1216aa	ENSRNOP00000086663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAW9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000101935.1	Pcdh1-202	5087	360aa	ENSRNOP00000077172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XVV3	-

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Summary

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