Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Thbs3 ENSRNOG00000059903

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Description

thrombospondin 3 [Source:RGD Symbol;Acc:1596780]

Gene Synonyms

LOC681309

Location

Primary_assembly 2: 174,621,812-174,633,594 forward strand.

mRatBN7.2:CM026975.1

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues, 5 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000103831.1	Thbs3-202	3151	957aa	ENSRNOP00000080353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G4F0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000087934.2	Thbs3-201	3177	955aa	ENSRNOP00000071047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JZH3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000115482.1	Thbs3-203	3066	918aa	ENSRNOP00000081607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSK2	-

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Summary

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