Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Col12a1 ENSRNOG00000058470

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Description

collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]

Location

Primary_assembly 8: 89,427,834-89,545,711 reverse strand.

GRCr8:CM070398.1

About this gene

This gene has 1 transcript (splice variant), 297 orthologues, 14 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077071.3	Col12a1-201	11622	3064aa	ENSRNOP00000075422.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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