Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Col12a1 ENSRNOG00000058470

.

Description

collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]

Location

Primary_assembly 8: 80,547,593-80,665,686 reverse strand.

mRatBN7.2:CM026981.1

About this gene

This gene has 3 transcripts (splice variants), 214 orthologues, 14 paralogues and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077071.2	Col12a1-201	10631	3119aa	ENSRNOP00000075422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000108595.1	Col12a1-203	12836	3102aa	ENSRNOP00000080952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRE6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000095926.1	Col12a1-202	9977	3080aa	ENSRNOP00000096476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6B493	-

.

Summary

.

.