Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Ift172 ENSRNOG00000057813

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Description

intraflagellar transport 172 [Source:RGD Symbol;Acc:620744]

Gene Synonyms

Slb

Location

Primary_assembly 6: 30,801,918-30,840,830 forward strand.

GRCr8:CM070396.1

About this gene

This gene has 3 transcripts (splice variants), 223 orthologues, 1 paralogue and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000091528.3	Ift172-203	5514	1784aa	ENSRNOP00000069468.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000085424.3	Ift172-201	5418	1737aa	ENSRNOP00000072658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MJL0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000090342.3	Ift172-202	5282	1731aa	ENSRNOP00000070902.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MK45	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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