Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Six3 ENSRNOG00000057031

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Description

SIX homeobox 3 [Source:RGD Symbol;Acc:620909]

Location

Primary_assembly 6: 14,789,354-14,804,175 reverse strand.

GRCr8:CM070396.1

About this gene

This gene has 5 transcripts (splice variants), 248 orthologues, 5 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000124438.1	Six3-205	2662	384aa	ENSRNOP00000109648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000122267.1	Six3-204	2683	347aa	ENSRNOP00000107137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000089174.3	Six3-201	2584	358aa	ENSRNOP00000072181.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K2C0 A0A8I6G4X0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000112536.2	Six3-203	2427	356aa	ENSRNOP00000084458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1B9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000091510.3	Six3-202	1408	350aa	ENSRNOP00000069889.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JWI0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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