Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LOC134478918 ENSRNOG00000056947

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Description

probable ATP-dependent RNA helicase DDX60 [Source:RGD Symbol;Acc:402151845]

Location

Primary_assembly 16: 32,607,395-33,208,798 reverse strand.

GRCr8:CM070406.1

About this gene

This gene has 5 transcripts (splice variants), 113 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105939.2	LOC134478918-202	6006	1708aa	ENSRNOP00000087074.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A3J7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000120317.2	LOC134478918-205	6003	1707aa	ENSRNOP00000088801.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GHF7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000106980.2	LOC134478918-203	5977	1564aa	ENSRNOP00000091014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABA4	-
ENSRNOT00000112917.2	LOC134478918-204	5947	1708aa	ENSRNOP00000097374.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASJ5	-
ENSRNOT00000095521.2	LOC134478918-201	5842	1673aa	ENSRNOP00000096643.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQP8	-

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Summary

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