Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Tarbp1 ENSRNOG00000053574

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Description

TAR (HIV-1) RNA binding protein 1 [Source:RGD Symbol;Acc:1589526]

Gene Synonyms

LOC679346

Location

Primary_assembly 19: 71,296,372-71,346,778 reverse strand.

GRCr8:CM070409.1

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077516.3	Tarbp1-201	5974	1608aa	ENSRNOP00000070582.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JYA7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000094771.2	Tarbp1-202	5971	1607aa	ENSRNOP00000097609.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AUM1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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