Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Hcfc2 ENSRNOG00000053510

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Description

host cell factor C2 [Source:RGD Symbol;Acc:1307385]

Gene Synonyms

HCF-2, LOC314704, MGC95223

Location

Primary_assembly 7: 22,864,278-22,907,322 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 4 transcripts (splice variants), 139 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000148925.1	Hcfc2-204	2287	736aa	ENSRNOP00000107865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000147485.1	Hcfc2-203	2993	661aa	ENSRNOP00000104880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000086905.3	Hcfc2-201	2356	723aa	ENSRNOP00000070255.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXF9 A6IFI3 Q5RKG2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000093791.2	Hcfc2-202	2273	715aa	ENSRNOP00000078223.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y755	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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