Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Npnt ENSRNOG00000052873

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Description

nephronectin [Source:RGD Symbol;Acc:1593709]

Gene Synonyms

LOC686753

Location

Primary_assembly 2: 224,065,191-224,133,435 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 6 transcripts (splice variants), 251 orthologues, 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000079479.3	Npnt-202	4635	608aa	ENSRNOP00000074549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K8C1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000078608.3	Npnt-201	4629	606aa	ENSRNOP00000073239.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K500 A6HVU1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000136700.1	Npnt-205	4578	589aa	ENSRNOP00000106435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HVU0	-
ENSRNOT00000118889.2	Npnt-204	4536	575aa	ENSRNOP00000077007.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y706	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000090834.3	Npnt-203	4398	529aa	ENSRNOP00000069738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JW46	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000165664.1	Npnt-206	2767	543aa	ENSRNOP00000099990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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