Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Chga ENSRNOG00000052549

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Description

chromogranin A [Source:RGD Symbol;Acc:2338]

Gene Synonyms

MGC105435, cgA

Location

Primary_assembly 6: 121,696,051-121,707,398 forward strand.

mRatBN7.2:CM026979.1

About this gene

This gene has 3 transcripts (splice variants), 176 orthologues, 1 paralogue and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114564.1	Chga-203	2014	477aa	ENSRNOP00000081394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G7X3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000100782.1	Chga-202	1975	464aa	ENSRNOP00000081505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G819	-
ENSRNOT00000090857.2	Chga-201	1882	465aa	ENSRNOP00000070296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5PPG5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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