Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Chd9 ENSRNOG00000049302

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Description

chromodomain helicase DNA binding protein 9 [Source:RGD Symbol;Acc:1306795]

Gene Synonyms

CReMM, LOC307726

Location

Primary_assembly 19: 32,115,920-32,319,042 reverse strand.

GRCr8:CM070409.1

About this gene

This gene has 2 transcripts (splice variants), 221 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000078786.3	Chd9-202	9941	2883aa	ENSRNOP00000070362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MJV7 A0A0G2JXQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000076138.3	Chd9-201	9892	2867aa	ENSRNOP00000067932.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MIZ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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