Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: RGD1309808 ENSRNOG00000047782

.

Description

similar to apolipoprotein L2; apolipoprotein L-II [Source:RGD Symbol;Acc:1309808]

Gene Synonyms

LOC100911562, LOC362951

Location

Primary_assembly 7: 109,305,709-109,322,865 forward strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 3 transcripts (splice variants), 492 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000092095.2	RGD1309808-203	1920	387aa	ENSRNOP00000074188.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000091911.2	RGD1309808-202	2258	384aa	ENSRNOP00000069691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JW05	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000074888.2	RGD1309808-201	1445	365aa	ENSRNOP00000064178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R498	-

.

Summary

.

.