brain-derived neurotrophic factor [Source:RGD Symbol;Acc:2202]
MGC105254
Primary_assembly 3: 116,619,633-116,670,657 forward strand.
GRCr8:CM070393.1
This gene has 9 transcripts (splice variants), 199 orthologues, 3 paralogues and is associated with 132 phenotypes.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSRNOT00000073636.4 | Bdnf-201 | 4000 | 362aa | ENSRNOP00000064356.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0H2UI28 A6HP02 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| ENSRNOT00000080190.3 | Bdnf-204 | 4742 | 249aa | ENSRNOP00000073265.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000077703.3 | Bdnf-202 | 4707 | 249aa | ENSRNOP00000072849.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000089233.3 | Bdnf-207 | 4506 | 249aa | ENSRNOP00000075479.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000090445.3 | Bdnf-208 | 4475 | 249aa | ENSRNOP00000073685.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000083542.3 | Bdnf-206 | 4291 | 257aa | ENSRNOP00000073647.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0G2K624 A6HP01 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSRNOT00000083289.3 | Bdnf-205 | 4199 | 249aa | ENSRNOP00000074338.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000078543.3 | Bdnf-203 | 4115 | 249aa | ENSRNOP00000072315.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6HP04 P23363 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSRNOT00000122945.1 | Bdnf-209 | 2031 | 276aa | ENSRNOP00000104100.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - |
