Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
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Gene: Casd1 ENSRNOG00000047453

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Description

CAS1 domain containing 1 [Source:RGD Symbol;Acc:1596912]

Gene Synonyms

LOC678772

Location

Primary_assembly 4: 33,613,450-33,705,821 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 4 transcripts (splice variants), 208 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000073687.4	Casd1-201	4230	935aa	ENSRNOP00000065104.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R6Q0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000107875.2	Casd1-202	3853	904aa	ENSRNOP00000077768.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y6Q3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000141861.1	Casd1-204	3807	782aa	ENSRNOP00000105315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000140870.1	Casd1-203	3653	724aa	ENSRNOP00000103576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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